Accessing the path of an object
Get or set the path of an object.
path(object, ...) path(object, ...) <- value basename(path, ...) basename(path, ...) <- value dirname(path, ...) dirname(path, ...) <- value ## The purpose of the following methods is to make the basename() and ## dirname() getters work out-of-the-box on any object for which the ## path() getter works. ## S4 method for signature 'ANY' basename(path, ...) ## S4 method for signature 'ANY' dirname(path, ...) ## The purpose of the following replacement methods is to make the ## basename() and dirname() setters work out-of-the-box on any object ## for which the path() getter and setter work. ## S4 replacement method for signature 'character' basename(path, ...) <- value ## S4 replacement method for signature 'ANY' basename(path, ...) <- value ## S4 replacement method for signature 'character' dirname(path, ...) <- value ## S4 replacement method for signature 'ANY' dirname(path, ...) <- value
object |
An object containing paths. Even though it will typically contain
a single path, |
... |
Additional arguments, for use in specific methods. |
value |
For For |
path |
A character vector or an object containing paths. |
A character vector for path(object)
, basename(path)
,
and dirname(path)
. Typically of length 1 but not necessarily.
Possibly with names on it for path(object)
.
base::basename
for the functions the
basename
and dirname
generics are based on.
showMethods
for displaying a summary of the
methods defined for a given generic function.
selectMethod
for getting the definition of
a specific method.
path,RsamtoolsFile-method in the
Rsamtools package for an example of a specific
path
method (defined for RsamtoolsFile
objects).
BiocGenerics for a summary of all the generics defined in the BiocGenerics package.
## --------------------------------------------------------------------- ## GENERIC FUNCTIONS AND DEFAULT METHODS ## --------------------------------------------------------------------- path showMethods("path") `path<-` showMethods("path<-") basename showMethods("basename") `basename<-` showMethods("basename<-") dirname showMethods("dirname") `dirname` showMethods("dirname<-") ## Default basename() and dirname() getters: selectMethod("basename", "ANY") selectMethod("dirname", "ANY") ## Default basename() and dirname() setters: selectMethod("basename<-", "character") selectMethod("basename<-", "ANY") selectMethod("dirname<-", "character") selectMethod("dirname<-", "ANY") ## --------------------------------------------------------------------- ## OBJECTS CONTAINING PATHS ## --------------------------------------------------------------------- ## Let's define a simple class to represent objects that contain paths: setClass("A", slots=c(stuff="ANY", path="character")) a <- new("A", stuff=runif(5), path=c(one="path/to/file1", two="path/to/file2")) ## path() getter: setMethod("path", "A", function(object) object@path) path(a) ## Because the path() getter works on 'a', now the basename() and ## dirname() getters also work: basename(a) dirname(a) ## path() setter: setReplaceMethod("path", "A", function(object, ..., value) { if (length(list(...)) != 0L) { dots <- match.call(expand.dots=FALSE)[[3L]] stop(BiocGenerics:::unused_arguments_msg(dots)) } object@path <- value object } ) a <- new("A", stuff=runif(5)) path(a) <- c(one="path/to/file1", two="path/to/file2") path(a) ## Because the path() getter and setter work on 'a', now the basename() ## and dirname() setters also work: basename(a) <- toupper(basename(a)) path(a) dirname(a) <- "~/MyDataFiles" path(a)
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