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plotMA

MA-plot: plot differences versus averages for high-throughput data


Description

A generic function which produces an MA-plot for an object containing microarray, RNA-Seq or other data.

Usage

plotMA(object, ...)

Arguments

object

A data object, typically containing count values from an RNA-Seq experiment or microarray intensity values.

...

Additional arguments, for use in specific methods.

Value

Undefined. The function exists for its side effect, producing a plot.

See Also

  • showMethods for displaying a summary of the methods defined for a given generic function.

  • selectMethod for getting the definition of a specific method.

  • plotMA in the limma package for a function with the same name that is not dispatched through this generic function.

  • BiocGenerics for a summary of all the generics defined in the BiocGenerics package.

Examples

showMethods("plotMA")

suppressWarnings(
  if(require("DESeq2"))
    example("plotMA", package="DESeq2", local=TRUE)
)

BiocGenerics

S4 generic functions used in Bioconductor

v0.36.1
Artistic-2.0
Authors
The Bioconductor Dev Team
Initial release

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