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tapply

Apply a function over a ragged array


Description

tapply applies a function to each cell of a ragged array, that is to each (non-empty) group of values given by a unique combination of the levels of certain factors.

NOTE: This man page is for the tapply S4 generic function defined in the BiocGenerics package. See ?base::tapply for the default method (defined in the base package). Bioconductor packages can define specific methods for objects (typically list-like or vector-like) not supported by the default method.

Usage

tapply(X, INDEX, FUN=NULL, ..., default=NA, simplify=TRUE)

Arguments

X

The default method expects an atomic object, typically a vector. See ?base::tapply for the details.

Specific methods can support other objects (typically list-like or vector-like). Please refer to the documentation of a particular method for the details.

INDEX

The default method expects a list of one or more factors, each of same length as X. See ?base::tapply for the details.

Specific methods can support other objects (typically list-like). Please refer to the documentation of a particular method for the details.

FUN, ..., default, simplify

See ?base::tapply for a description of these arguments.

Value

See ?base::tapply for the value returned by the default method.

Specific methods defined in Bioconductor packages should behave as consistently as possible with the default method.

See Also

  • base::tapply for the default tapply method.

  • showMethods for displaying a summary of the methods defined for a given generic function.

  • selectMethod for getting the definition of a specific method.

  • tapply,Vector,ANY-method in the IRanges package for an example of a specific tapply method (defined for Vector objects).

  • BiocGenerics for a summary of all the generics defined in the BiocGenerics package.

Examples

tapply  # note the dispatch on the 'X' and 'INDEX' args only
showMethods("tapply")
selectMethod("tapply", c("ANY", "ANY"))  # the default method

BiocGenerics

S4 generic functions used in Bioconductor

v0.36.1
Artistic-2.0
Authors
The Bioconductor Dev Team
Initial release

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