getSeq
A generic function for extracting a set of sequences (or subsequences) from a sequence container like a BSgenome object or other.
getSeq(x, ...)
x |
A BSgenome object or any other supported object.
Do |
... |
Any additional arguments needed by the specialized methods. |
An XString object or an XStringSet object or a character vector containing the extracted sequence(s).
See man pages of individual methods for the details e.g. with
?`getSeq,BSgenome-method` to access the man page
of the method for BSgenome objects (make sure the
BSgenome package is loaded first).
## Note that you need to load the package(s) defining the specialized
## methods to have showMethods() display them and to be able to access
## their man pages:
library(BSgenome)
showMethods("getSeq")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.