Lines Annotation
Lines Annotation
anno_lines(x, which = c("column", "row"), border = TRUE, gp = gpar(),
add_points = smooth, smooth = FALSE, pch = 16, size = unit(2, "mm"), pt_gp = gpar(), ylim = NULL,
extend = 0.05, axis = TRUE, axis_param = default_axis_param(which),
width = NULL, height = NULL)x |
The value vector. The value can be a vector or a matrix. The length of the vector or the number of rows of the matrix is taken as the number of the observations of the annotation. |
which |
Whether it is a column annotation or a row annotation? |
border |
Wether draw borders of the annotation region? |
gp |
Graphic parameters for lines. The length of each graphic parameter can be 1, or number of columns of |
add_points |
Whether to add points on the lines? |
smooth |
If it is |
pch |
Point type. The length setting is the same as |
size |
Point size, the value should be a |
pt_gp |
Graphic parameters for points. The length setting is the same as |
ylim |
Data ranges. By default it is |
extend |
The extension to both side of |
axis |
Whether to add axis? |
axis_param |
parameters for controlling axis. See |
width |
Width of the annotation. The value should be an absolute unit. Width is not allowed to be set for column annotation. |
height |
Height of the annotation. The value should be an absolute unit. Height is not allowed to be set for row annotation. |
An annotation function which can be used in HeatmapAnnotation.
anno = anno_lines(runif(10)) draw(anno, test = "anno_lines") anno = anno_lines(cbind(c(1:5, 1:5), c(5:1, 5:1)), gp = gpar(col = 2:3)) draw(anno, test = "matrix") anno = anno_lines(cbind(c(1:5, 1:5), c(5:1, 5:1)), gp = gpar(col = 2:3), add_points = TRUE, pt_gp = gpar(col = 5:6), pch = c(1, 16)) draw(anno, test = "matrix")
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.