Translate pheatmap::pheatmap to ComplexHeatmap::Heatmap
Translate pheatmap::pheatmap to ComplexHeatmap::Heatmap
pheatmap(mat, color = colorRampPalette(rev(brewer.pal(n = 7, name = "RdYlBu")))(100), kmeans_k = NA, breaks = NA, border_color = "grey60", cellwidth = NA, cellheight = NA, scale = "none", cluster_rows = TRUE, cluster_cols = TRUE, clustering_distance_rows = "euclidean", clustering_distance_cols = "euclidean", clustering_method = "complete", clustering_callback = NA, cutree_rows = NA, cutree_cols = NA, treeheight_row = ifelse(class(cluster_rows) == "hclust" || cluster_rows, 50, 0), treeheight_col = ifelse(class(cluster_cols) == "hclust" || cluster_cols, 50, 0), legend = TRUE, legend_breaks = NA, legend_labels = NA, annotation_row = NA, annotation_col = NA, annotation = NA, annotation_colors = NA, annotation_legend = TRUE, annotation_names_row = TRUE, annotation_names_col = TRUE, drop_levels = TRUE, show_rownames = TRUE, show_colnames = TRUE, main = NA, fontsize = 10, fontsize_row = fontsize, fontsize_col = fontsize, angle_col = c("270", "0", "45", "90", "315"), display_numbers = FALSE, number_format = "%.2f", number_color = "grey30", fontsize_number = 0.8 * fontsize, gaps_row = NULL, gaps_col = NULL, labels_row = NULL, labels_col = NULL, filename = NA, width = NA, height = NA, silent = FALSE, na_col = "#DDDDDD", name = "Matrix", ...)
mat |
The input matrix. |
color |
The same as in |
kmeans_k |
Not supported. |
breaks |
The same as in |
border_color |
The same as in |
cellwidth |
The same as in |
cellheight |
The same as in |
scale |
The same as in |
cluster_rows |
The same as in |
cluster_cols |
The same as in |
clustering_distance_rows |
The same as in |
clustering_distance_cols |
The same as in |
clustering_method |
The same as in |
clustering_callback |
The same as in |
cutree_rows |
The same as in |
cutree_cols |
The same as in |
treeheight_row |
The same as in |
treeheight_col |
The same as in |
legend |
The same as in |
legend_breaks |
The same as in |
legend_labels |
The same as in |
annotation_row |
The same as in |
annotation_col |
The same as in |
annotation |
The same as in |
annotation_colors |
The same as in |
annotation_legend |
The same as in |
annotation_names_row |
The same as in |
annotation_names_col |
The same as in |
drop_levels |
Enforced to be |
show_rownames |
The same as in |
show_colnames |
The same as in |
main |
The same as in |
fontsize |
The same as in |
fontsize_row |
The same as in |
fontsize_col |
The same as in |
angle_col |
The same as in |
display_numbers |
The same as in |
number_format |
The same as in |
number_color |
The same as in |
fontsize_number |
The same as in |
gaps_row |
The same as in |
gaps_col |
The same as in |
labels_row |
The same as in |
labels_col |
The same as in |
filename |
Not supported. |
width |
Not supported. |
height |
Not supported. |
silent |
Not supported. |
na_col |
The same as in |
name |
Name of the heatmap. This argument is passed to |
... |
Other arguments passed to |
A Heatmap-class
object.
compare_pheatmap
that ompares heatmaps between pheatmap::pheatmap()
and ComplexHeatmap::pheatmap()
.
# There is no example NULL
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