DESeq2: DESeqTransform – R documentation

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DESeqTransform

DESeqTransform object and constructor

Description

This constructor function would not typically be used by "end users". This simple class extends the RangedSummarizedExperiment class of the SummarizedExperiment package. It is used by rlog and varianceStabilizingTransformation to wrap up the results into a class for downstream methods, such as plotPCA.

Usage

DESeqTransform(SummarizedExperiment)

Arguments

SummarizedExperiment

a RangedSummarizedExperiment

Value

a DESeqTransform object

DESeq2

Differential gene expression analysis based on the negative binomial distribution

v1.30.1

LGPL (>= 3)

Authors

Michael Love [aut, cre], Constantin Ahlmann-Eltze [ctb], Kwame Forbes [ctb], Simon Anders [aut, ctb], Wolfgang Huber [aut, ctb]

Initial release