DESeq2: design – R documentation

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design

Accessors for the 'design' slot of a DESeqDataSet object.

Description

The design holds the R formula which expresses how the counts depend on the variables in colData. See DESeqDataSet for details.

Usage

## S4 method for signature 'DESeqDataSet'
design(object)

## S4 replacement method for signature 'DESeqDataSet,formula'
design(object) <- value

## S4 replacement method for signature 'DESeqDataSet,matrix'
design(object) <- value

Arguments

`object`	a `DESeqDataSet` object
`value`	a `formula` used for estimating dispersion and fitting Negative Binomial GLMs

Examples

dds <- makeExampleDESeqDataSet(m=4)
design(dds) <- formula(~ 1)

DESeq2

Differential gene expression analysis based on the negative binomial distribution

v1.30.1

LGPL (>= 3)

Authors

Michael Love [aut, cre], Constantin Ahlmann-Eltze [ctb], Kwame Forbes [ctb], Simon Anders [aut, ctb], Wolfgang Huber [aut, ctb]

Initial release