DESeq2: summary – R documentation

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summary

Summarize DESeq results

Print a summary of the results from a DESeq analysis.

## S4 method for signature 'DESeqResults'
summary(object, alpha, ...)

`object`	a `DESeqResults` object
`alpha`	the adjusted p-value cutoff. If not set, this defaults to the `alpha` argument which was used in `results` to set the target FDR for independent filtering, or if independent filtering was not performed, to 0.1.
`...`	additional arguments

Michael Love

dds <- makeExampleDESeqDataSet(m=4)
dds <- DESeq(dds)
res <- results(dds)
summary(res)

Differential gene expression analysis based on the negative binomial distribution

v1.30.1

LGPL (>= 3)

Authors

Michael Love [aut, cre], Constantin Ahlmann-Eltze [ctb], Kwame Forbes [ctb], Simon Anders [aut, ctb], Wolfgang Huber [aut, ctb]

Initial release