DOSE: clusterSim – R documentation

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clusterSim

semantic similarity between two gene clusters

clusterSim(cluster1, cluster2, measure = "Wang", combine = "BMA")

`cluster1`	a vector of gene IDs
`cluster2`	another vector of gene IDs
`measure`	One of "Resnik", "Lin", "Rel", "Jiang" and "Wang" methods.
`combine`	One of "max", "avg", "rcmax", "BMA" methods, for combining

given two gene clusters, this function calculates semantic similarity between them.

similarity

Yu Guangchuang

cluster1 <- c("835", "5261","241", "994")
cluster2 <- c("307", "308", "317", "321", "506", "540", "378", "388", "396")
clusterSim(cluster1, cluster2)

Disease Ontology Semantic and Enrichment analysis

v3.16.0

Artistic-2.0

Authors

Guangchuang Yu [aut, cre], Li-Gen Wang [ctb], Vladislav Petyuk [ctb], Giovanni Dall'Olio [ctb], Erqiang Hu [ctb]

Initial release