enrich.internal
interal method for enrichment analysis
enricher_internal( gene, pvalueCutoff, pAdjustMethod = "BH", universe = NULL, minGSSize = 10, maxGSSize = 500, qvalueCutoff = 0.2, USER_DATA )
gene |
a vector of entrez gene id. |
pvalueCutoff |
Cutoff value of pvalue. |
pAdjustMethod |
one of "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none" |
universe |
background genes |
minGSSize |
minimal size of genes annotated by Ontology term for testing. |
maxGSSize |
maximal size of each geneSet for analyzing |
qvalueCutoff |
cutoff of qvalue |
USER_DATA |
ontology information |
using the hypergeometric model
A enrichResult instance.
Guangchuang Yu http://guangchuangyu.github.io
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.