geneSim
measuring similarities bewteen two gene vectors.
geneSim(geneID1, geneID2 = NULL, measure = "Wang", combine = "BMA")
geneID1 |
entrez gene vector |
geneID2 |
entrez gene vector |
measure |
one of "Wang", "Resnik", "Rel", "Jiang", and "Lin". |
combine |
One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein. |
provide two entrez gene vectors, this function will calculate their similarity.
score matrix
Guangchuang Yu http://ygc.name
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