Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

gseDGN

DisGeNET Gene Set Enrichment Analysis

Description

perform gsea analysis

Usage

gseDGN(
  geneList,
  exponent = 1,
  minGSSize = 10,
  maxGSSize = 500,
  pvalueCutoff = 0.05,
  pAdjustMethod = "BH",
  verbose = TRUE,
  seed = FALSE,
  by = "fgsea",
  ...
)

Arguments

geneList

order ranked geneList
exponent

weight of each step
minGSSize

minimal size of each geneSet for analyzing
maxGSSize

maximal size of each geneSet for analyzing
pvalueCutoff

pvalue Cutoff
pAdjustMethod

p value adjustment method
verbose

print message or not
seed

logical
by

one of 'fgsea' or 'DOSE'
...

other parameter

Value

gseaResult object

Author(s)

Yu Guangchuang

DOSE

Disease Ontology Semantic and Enrichment analysis

v3.16.0
Artistic-2.0
Authors
Guangchuang Yu [aut, cre], Li-Gen Wang [ctb], Vladislav Petyuk [ctb], Giovanni Dall'Olio [ctb], Erqiang Hu [ctb]
Initial release

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.