mclusterSim
Pairwise semantic similarity for a list of gene clusters
mclusterSim(clusters, measure = "Wang", combine = "BMA")
clusters |
A list of gene clusters |
measure |
one of "Wang", "Resnik", "Rel", "Jiang", and "Lin". |
combine |
One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein. |
similarity matrix
Yu Guangchuang
cluster1 <- c("835", "5261","241")
cluster2 <- c("578","582")
cluster3 <- c("307", "308", "317")
clusters <- list(a=cluster1, b=cluster2, c=cluster3)
mclusterSim(clusters, measure="Wang")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.