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costARc

Cost functions for DendSer


Description

Each of these functions evaluates the cost of an ordering.

Usage

costARc(sw, o, target = nrow(sw) - 1, ...)
costBAR(sw, o, target=max(2,floor(nrow(sw)/5)),...)
costLS(sw, o, target=seq_along(sw),...)
costPL(sw, o, ...)
costLPL(sw, o, target=(nrow(sw)-1):1,...)
costED(sw, o, node,se,...)

Arguments

sw

For cost=costLS, this is a vector of object weights. Otherwise is a symmetric matrix.

o

An ordering vector.

node

The node

se

Extra info

target

Parameter used by cost function.

...

Other args.

Value

Result of cost

Author(s)

Catherine Hurley & Denise Earle


DendSer

Dendrogram seriation: ordering for visualisation

v1.0.1
GPL-2
Authors
Catherine B. Hurley and Denise Earle
Initial release
2013-09-09

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