Map IDs to Genomic Ranges
Map IDs to Genomic Ranges
mapIdsToRanges(x, ...)
## S4 method for signature 'TxDb'
mapIdsToRanges(x, keys, type = c("cds", "exon", "tx",
"gene"), columns = NULL)x |
Database to use for mapping |
keys |
Values to lookup, passed to |
type |
Types of feature to return |
columns |
Additional metadata columns to include in the output |
... |
Additional arguments passed to methods |
GRangesList corresponding to the keys
TxDb: TxDb method
fl <- system.file(package = "GenomicFeatures", "extdata", "sample_ranges.rds")
txdb <- makeTxDbFromGRanges(readRDS(fl))
keys <- list(tx_name = c("ENST00000371582", "ENST00000371588",
"ENST00000494752", "ENST00000614008", "ENST00000496771"))
mapIdsToRanges(txdb, keys = keys, type = "tx")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.