HardyWeinberg: HWAlltests – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

HWAlltests

Perform all tests for Hardy-Weinberg equilibrium

HWAlltests performs all classical frequentists tests for Hardy-Weinberg equilibrium and lists their p-values.

HWAlltests(x, verbose = TRUE, include.permutation.test = FALSE, x.linked = FALSE)

`x`	a vector with a set of genotype counts (AA, AB, BB)
`verbose`	print output if set to TRUE
`include.permutation.test`	turns on the permutation test if set to TRUE
`x.linked`	`x.linked=FALSE` indicates the marker is autosomal (default), and `x.linked=TRUE` indicates it resides on the X-chromosome.

By default the permutation test is not performed in order to reduce computing time.

A dataframe with test statistics and p-values.

x <- c(298,489,213)
names(x) <- c("MM","MN","NN")
HWAlltests(x,verbose=TRUE)

Statistical Tests and Graphics for Hardy-Weinberg Equilibrium

v1.7.2

GPL (>= 2)

Authors

Jan Graffelman [aut, cre], Christopher Chang [ctb], Xavi Puig [ctb], Jan Wigginton [ctb], Leonardo Ortoleva [ctb], William R. Engels [ctb]

Initial release

2021-04-28