HardyWeinberg: UniqueGenotypeCounts – R documentation

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UniqueGenotypeCounts

Extract unique genotypic compositions from a matrix

Function UniqueGenotypeCounts creates a matrix containing only the unique rows in the given matrix, together with their frequency of occurrence

UniqueGenotypeCounts(X, verbose = TRUE)

`X`	A n by 3 matrix with genotypic counts (AA,AB,BB)
`verbose`	If TRUE then print some statistics

A matrix with 4 columns, AA, AB, BB, and frequency of occurrence

set.seed(123)
X <- HWData(n=100,nm=100)
print(nrow(X))
Y <- UniqueGenotypeCounts(X)
print(nrow(Y))
print(sum(Y$w))

Statistical Tests and Graphics for Hardy-Weinberg Equilibrium

v1.7.2

GPL (>= 2)

Authors

Jan Graffelman [aut, cre], Christopher Chang [ctb], Xavi Puig [ctb], Jan Wigginton [ctb], Leonardo Ortoleva [ctb], William R. Engels [ctb]

Initial release

2021-04-28