HardyWeinberg: HWChisqMat – R documentation

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HWChisqMat

Matrix version of HWChisq

HWChisqMat executes the Chisquare test for HWE for each row in a matrix.

HWChisqMat(X, ...)

`X`	A n times 3 matrix of genotypic counts (AA,AB,BB)
`...`	extra arguments that are passed on to `HWChisq`

`pvalvec`	Vector with the p-values of each test
`chisqvec`	Vector with the chi-square statistics
`Dvec`	Vector with deviations from independence

X <- HWData(100,10)
colnames(X) <- c("MM","MN","NN")
Results <- HWChisqMat(X)
Output <- cbind(X,Results$chisqvec,Results$pvalvec)
print(Output)

Statistical Tests and Graphics for Hardy-Weinberg Equilibrium

v1.7.2

GPL (>= 2)

Authors

Jan Graffelman [aut, cre], Christopher Chang [ctb], Xavi Puig [ctb], Jan Wigginton [ctb], Leonardo Ortoleva [ctb], William R. Engels [ctb]

Initial release

2021-04-28