Hmisc: hdquantile – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

hdquantile

Harrell-Davis Distribution-Free Quantile Estimator

Description

Computes the Harrell-Davis (1982) quantile estimator and jacknife standard errors of quantiles. The quantile estimator is a weighted linear combination or order statistics in which the order statistics used in traditional nonparametric quantile estimators are given the greatest weight. In small samples the H-D estimator is more efficient than traditional ones, and the two methods are asymptotically equivalent. The H-D estimator is the limit of a bootstrap average as the number of bootstrap resamples becomes infinitely large.

Usage

hdquantile(x, probs = seq(0, 1, 0.25),
           se = FALSE, na.rm = FALSE, names = TRUE, weights=FALSE)

Arguments

`x`	a numeric vector
`probs`	vector of quantiles to compute
`se`	set to `TRUE` to also compute standard errors
`na.rm`	set to `TRUE` to remove `NA`s from `x` before computing quantiles
`names`	set to `FALSE` to prevent names attributions from being added to quantiles and standard errors
`weights`	set to `TRUE` to return a `"weights"` attribution with the matrix of weights used in the H-D estimator corresponding to order statistics, with columns corresponding to quantiles.

Details

A Fortran routine is used to compute the jackknife leave-out-one quantile estimates. Standard errors are not computed for quantiles 0 or 1 (NAs are returned).

Value

A vector of quantiles. If se=TRUE this vector will have an attribute se added to it, containing the standard errors. If weights=TRUE, also has a "weights" attribute which is a matrix.

Author(s)

Frank Harrell

References

Harrell FE, Davis CE (1982): A new distribution-free quantile estimator. Biometrika 69:635-640.

Hutson AD, Ernst MD (2000): The exact bootstrap mean and variance of an L-estimator. J Roy Statist Soc B 62:89-94.

Examples

set.seed(1)
x <- runif(100)
hdquantile(x, (1:3)/4, se=TRUE)

## Not run: 
# Compare jackknife standard errors with those from the bootstrap
library(boot)
boot(x, function(x,i) hdquantile(x[i], probs=(1:3)/4), R=400)

## End(Not run)

Hmisc

Harrell Miscellaneous

v4.5-0

GPL (>= 2)

Authors

Frank E Harrell Jr <fh@fharrell.com>, with contributions from Charles Dupont and many others.

Initial release

2021-02-27