MALDIquantForeign: importMzXml-functions – R documentation

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importMzXml-functions

Import mzXML files

Description

This function imports files in mzXML file format into MassSpectrum-class or MassPeaks-class objects.

Usage

importMzXml(path, ...)

Arguments

`path`	`character`, path to directory or file which should be read in.
`...`	arguments to be passed to `readMzXmlFile`.

Value

a list of MassSpectrum-class or MassPeaks-class objects (depending on the centroided argument).

Author(s)

Sebastian Gibb

References

http://strimmerlab.org/software/maldiquant/,
Definition of mzXML format: http://tools.proteomecenter.org/mzXMLschema.php

Examples

library("MALDIquant")
library("MALDIquantForeign")

## get example directory
exampleDirectory <- system.file("exampledata", package="MALDIquantForeign")

## import
s <- importMzXml(exampleDirectory)

MALDIquantForeign

Import/Export Routines for 'MALDIquant'

v0.12

GPL (>= 3)

Authors

Sebastian Gibb [aut, cre] (<https://orcid.org/0000-0001-7406-4443>), Pietro Franceschi [ctb]

Initial release

2019-01-30