MCMCglmm

Blue Tit Data for a Quantitative Genetic Experiment

Blue Tit Pedigree

d-divergence

List of unevaluated expressions for (mixed) partial derivatives of fitness with respect to linear predictors.

Tensor of (mixed) partial derivatives

Kronecker Product Permutation Matrix

Multivariate Generalised Linear Mixed Models

Multivariate Generalised Linear Mixed Models

Phenoloxidase measures on caterpillars of the Indian meal moth.

Resistance of Indian meal moth caterpillars to the granulosis virus PiGV.

Resistance (as a binary trait) of Indian meal moth caterpillars to the granulosis virus PiGV.

Tensor of Sample (Mixed) Central Moments

Horn type and genders of Soay Sheep

Lower/Upper Triangle Elements of a Matrix

Incidence Matrix of Levels within a Factor

Incidence Matrix of Combined Levels within a Factor

Forms expected (co)variances for GLMMs fitted with MCMCglmm

Commutation Matrix

Density of a (conditional) multivariate normal variate

Evaluates a list of (mixed) partial derivatives

Prior Covariance Matrix for Fixed Effects.

Inverse Relatedness Matrix and Phylogenetic Covariance Matrix

(Mixed) Central Moments of a Multivariate Normal Distribution

Krzanowski's Comparison of Subspaces

Central Moments of a Uniform Distribution

Forms the direct sum from a list of matrices

Design Matrix for Measurement Error Model

Design Matrices for Multiple Membership Models

Design Matrix for Path Analyses

Probability that all multinomial categories have a non-zero count.

Plots MCMC chains from MCMCglmm using plot.mcmc

Plots covariance matrices

Posterior distribution of ante-dependence parameters

Transforms posterior distribution of covariances into correlations

Posterior distribution of eigenvalues

Posterior distribution of matrix inverse

Estimates the marginal parameter modes using kernel density estimation

Predict method for GLMMs fitted with MCMCglmm

Pedigree pruning

Random Generation from the Conditional Inverse Wishart Distribution

Random Generation of MVN Breeding Values and Phylogenetic Effects

Residuals form a GLMM fitted with MCMCglmm

Random Generation from a Truncated Conditional Normal Distribution

Random Generation from a Truncated Normal Distribution

Simulate method for GLMMs fitted with MCMCglmm

Design Matrix for Simultaneous and Recursive Relationships between Responses

Converts sparseMatrix to asreml's giv format

Orthogonal Spline Design Matrix

Summarising GLMM Fits from MCMCglmm