MsCoreUtils: peakRegionMask – R documentation

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peakRegionMask

Peak Region Mask

Description

This function finds the mz region spanning by a peak. It creates an 0/1 matrix used for multiplications in other functions.

Usage

.peakRegionMask(x, p, k = 30L)

Arguments

`x`	`numeric`, e.g. intensity values.
`p`	`integer`, indices of identified peaks/local maxima.
`k`	`integer(1)`: maximum number of values left and right of the peak that should be looked for valleys.

Value

A matrix with a column for each peak in p and 2 * k + 1 rows where the middle row k + 1 is the peak centroid. If the values is 1 the index belongs to the peak region.

Author(s)

Sebastian Gibb

Examples

ints <- c(5, 8, 12, 7, 4, 9, 15, 16, 11, 8, 3, 2, 3, 2, 9, 12, 14, 13, 8, 3)
mzs <- seq_along(ints)
peaks <- which(localMaxima(ints, hws = 3L))

m <- MsCoreUtils:::.peakRegionMask(ints, peaks, k = 5L)

MsCoreUtils

Core Utils for Mass Spectrometry Data

v1.2.0

Artistic-2.0

Authors

RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] (<https://orcid.org/0000-0002-1520-2268>), Johannes Rainer [aut] (<https://orcid.org/0000-0002-6977-7147>), Sebastian Gibb [aut] (<https://orcid.org/0000-0001-7406-4443>), Adriaan Sticker [ctb], Sigurdur Smarason [ctb], Thomas Naake [ctb]

Initial release