Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

robustSummary

Return the Robust Expression Summary of a matrix


Description

This function calculates the robust summarisation for each feature (protein). Note that the function assumes that the intensities in input e are already log-transformed.

Usage

robustSummary(x, ...)

Arguments

x

A feature by sample matrix containing quantitative data with mandatory colnames and rownames.

...

Additional arguments passed to MASS::rlm().

Value

numeric() vector of length ncol(x) with robust summarised values.

Author(s)

Adriaan Sticker, Sebastian Gibb and Laurent Gatto

See Also

Other Quantitative feature aggregation: aggregate_by_vector(), colCounts(), medianPolish()

Examples

x <- matrix(rnorm(30), nrow = 3)
colnames(x) <- letters[1:10]
rownames(x) <- LETTERS[1:3]
robustSummary(x)

MsCoreUtils

Core Utils for Mass Spectrometry Data

v1.2.0
Artistic-2.0
Authors
RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] (<https://orcid.org/0000-0002-1520-2268>), Johannes Rainer [aut] (<https://orcid.org/0000-0002-6977-7147>), Sebastian Gibb [aut] (<https://orcid.org/0000-0001-7406-4443>), Adriaan Sticker [ctb], Sigurdur Smarason [ctb], Thomas Naake [ctb]
Initial release

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.