Calculates proportion of shared alleles per pairs of populations
Calculates proportion of shared alleles per pairs of populations based on the minima of allele frequency for each allel (then summed and averaged over loci). Returns a similarity matrix (upper diagonal of the pairwise matrix.
pairwise.propShared(gi)
gi |
a genind object with at least two populations |
a matrix of proportion of shared alleles between populations
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