RMark: create.mark.mcmc – R documentation

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create.mark.mcmc

Create mcmc object for analysis with coda

Description

Reads in mcmc file from program MARK in binary and returns an mcmc object that can be used with coda functions which are most easily accessed via codamenu().

Usage

create.mark.mcmc(filename, ncovs, nmeans, ndesigns, nsigmas, nrhos, nlogit,
  include = F)

Arguments

`filename`	name of file containing mcmc values
`ncovs`	number of covariates
`nmeans`	number of means
`ndesigns`	number of designs
`nsigmas`	number of sigmas
`nrhos`	number of rhos
`nlogit`	number of logits
`include`	if TRUE it includes ir/propJumps fields

Value

An mcmc object if one chain and an mcmc list if more than one chain. Each can be used with the coda package

Author(s)

Jeff Laake

RMark

R Code for Mark Analysis

v2.2.7

GPL (>= 2)

Authors

Jeff Laake <jefflaake@gmail.com> with code contributions from Eldar Rakhimberdiev, Ben Augustine, Daniel Turek and Brett McClintock and example data and analysis from Bret Collier, Jay Rotella, David Pavlacky, Andrew Paul, Luke Eberhart- Phillips, Jake Ivan, and Connor Wood.

Initial release

2019-11-4