Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

S4Vectors

Foundation of vector-like and list-like containers in Bioconductor

The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. In addition, a few low-level concrete subclasses of general interest (e.g. DataFrame, Rle, and Hits) are implemented in the S4Vectors package itself (many more are implemented in the IRanges package and in other Bioconductor infrastructure packages).

Functions (38)

Annotated-class

Annotated class

DataFrame-class

DataFrame objects

DataFrame-comparison

DataFrame comparison methods

DataFrame-utils

Common operations on DataFrame objects

Factor-class

Factor objects

FilterMatrix-class

Matrix for Filter Results

FilterRules-class

Collection of Filter Rules

Hits-class

Hits objects

Hits-comparison

Comparing and ordering hits

Hits-setops

Set operations on Hits objects

HitsList-class

List of Hits objects

LLint-class

LLint vectors

List-class

List objects

List-utils

Common operations on List objects

Pairs-class

Pairs objects

RectangularData-class

RectangularData objects

Rle-class

Rle objects

Rle-runstat

Fixed-width running window summaries

Rle-utils

Common operations on Rle objects

S4Vectors-internals

S4Vectors internals

SimpleList-class

SimpleList objects

TransposedDataFrame-class

TransposedDataFrame objects

Vector-class

Vector objects

Vector-comparison

Compare, order, tabulate vector-like objects

Vector-merge

Merge vector-like objects

Vector-setops

Set operations on vector-like objects

aggregate-methods

Compute summary statistics of subsets of vector-like objects

bindROWS

Combine objects by ROWS or COLS

character-utils

Some utility functions to operate on strings

expand-methods

Unlist the list-like columns of a DataFrame object

integer-utils

Some utility functions to operate on integer vectors

isSorted

Test if a vector-like object is sorted

shiftApply-methods

Apply a function over subsequences of 2 vector-like objects

show-utils

Display utilities

splitAsList

Divide a vector-like object into groups

stack-methods

Stack objects

subsetting-utils

Subsetting utilities

zip-methods

Convert between parallel vectors and lists

S4Vectors

Foundation of vector-like and list-like containers in Bioconductor

v0.28.1
Artistic-2.0
Authors
H. Pagès, M. Lawrence and P. Aboyoun
Initial release

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.