TMB: as.list.sdreport – R documentation

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TMB

as.list.sdreport

Convert estimates to original list format.

Description

Get estimated parameters or standard errors in the same shape as the original parameter list.

Usage

## S3 method for class 'sdreport'
as.list(x, what = "", report = FALSE, ...)

Arguments

`x`	Output from `sdreport`.
`what`	Select what to convert (Estimate / Std. Error).
`report`	Get AD reported variables rather than model parameters ?
`...`	Passed to `summary.sdreport`.

Details

This function converts the selected column what of summary(x, select = c("fixed", "random"), ...) to the same format as the original parameter list (re-ordered as the template parameter order). The argument what is partially matched among the column names of the summary table. The actual match is added as an attribute to the output.

Value

List of same shape as original parameter list.

Examples

## Not run: 
example(sdreport)

## Estimates as a parameter list:
as.list(rep, "Est")

## Std Errors in the same list format:
as.list(rep, "Std")

## p-values in the same list format:
as.list(rep, "Pr", p.value=TRUE)

## AD reported variables as a list:
as.list(rep, "Estimate", report=TRUE)

## Bias corrected AD reported variables as a list:
as.list(rep, "Est. (bias.correct)", report=TRUE)

## End(Not run)

TMB

Template Model Builder: A General Random Effect Tool Inspired by 'ADMB'

v1.7.20

GPL-2

Authors

Kasper Kristensen [aut, cre, cph], Brad Bell [cph], Hans Skaug [ctb], Arni Magnusson [ctb], Casper Berg [ctb], Anders Nielsen [ctb], Martin Maechler [ctb], Theo Michelot [ctb], Mollie Brooks [ctb], Alex Forrence [ctb], Christoffer Moesgaard Albertsen [ctb], Cole Monnahan [ctb]

Initial release

2021-04-08