WGCNA: PWLists – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

PWLists

Pathways with Corresponding Gene Markers - Compiled by Mike Palazzolo and Jim Wang from CHDI

Description

This matrix gives a predefined set of marker genes for many immune response pathways, as assembled by Mike Palazzolo and Jim Wang from CHDI, and colleagues. It is used with userListEnrichment to search user-defined gene lists for enrichment.

Usage

data(PWLists)

Format

A 124350 x 2 matrix of characters containing 2724 Gene / Category pairs. The first column (Gene) lists genes corresponding to a given category (second column). Each Category entry is of the form <gene set>__<reference>.

Source

For more information about this list, please see userListEnrichment

Examples

data(PWLists)
head(PWLists)

WGCNA

Weighted Correlation Network Analysis

v1.70-3

GPL (>= 2)

Authors

Peter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu> with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang

Initial release

2021-02-17