WGCNA: branchSplit – R documentation

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branchSplit

Branch split.

Description

Calculation of branch split based on expression data. This function is used as a plugin for the dynamicTreeCut package and the user should not call this function directly.

Usage

branchSplit(
  expr, 
  branch1, branch2, 
  discardProp = 0.05, minCentralProp = 0.75, 
  nConsideredPCs = 3, 
  signed = FALSE, 
  getDetails = TRUE, ...)

Arguments

`expr`	Expression data.
`branch1`	Branch 1,
`branch2`	Branch 2.
`discardProp`	Proportion of data to be discarded as outliers.
`minCentralProp`	Minimum central proportion
`nConsideredPCs`	Number of principal components to consider.
`signed`	Should the network be considered signed?
`getDetails`	Should details of the calculation be returned?
`...`	Other arguments. Present for compatibility; currently unusued.

Value

A single number or a list containing detils of the calculation.

Author(s)

Peter Langfelder

WGCNA

Weighted Correlation Network Analysis

v1.70-3

GPL (>= 2)

Authors

Peter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu> with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang

Initial release

2021-02-17