WGCNA: branchSplit.dissim – R documentation

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branchSplit.dissim

Branch split based on dissimilarity.

Description

Calculation of branch split based on a dissimilarity matrix. This function is used as a plugin for the dynamicTreeCut package and the user should not call this function directly. This function is experimental and subject to change.

Usage

branchSplit.dissim(
  dissimMat, 
  branch1, branch2, 
  upperP, 
  minNumberInSplit = 5, 
  getDetails = FALSE, ...)

Arguments

`dissimMat`	Dissimilarity matrix.
`branch1`	Branch 1.
`branch2`	Branch 2.
`upperP`	Percentile of (closest) objects to be considered.
`minNumberInSplit`	Minimum number of objects to be considered.
`getDetails`	Should details of the calculation be returned?
`...`	Other arguments for compatibility; currently unused.

Value

A single number or a list containing details of the calculation.

Author(s)

Peter Langfelder

WGCNA

Weighted Correlation Network Analysis

v1.70-3

GPL (>= 2)

Authors

Peter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu> with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang

Initial release

2021-02-17