WGCNA: moduleNumber – R documentation

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Documentation

WGCNA

moduleNumber

Fixed-height cut of a dendrogram.

Description

Detects branches of on the input dendrogram by performing a fixed-height cut.

Usage

moduleNumber(dendro, cutHeight = 0.9, minSize = 50)

Arguments

`dendro`	a hierarchical clustering dendorgram such as one returned by `hclust`.
`cutHeight`	Maximum joining heights that will be considered.
`minSize`	Minimum cluster size.

Details

All contiguous branches below the height cutHeight that contain at least minSize objects are assigned unique positive numerical labels; all unassigned objects are assigned label 0.

Value

A vector of numerical labels giving the assigment of each object.

Note

The numerical labels may not be sequential. See normalizeLabels for a way to put the labels into a standard order.

Author(s)

Peter Langfelder, Peter.Langfelder@gmail.com