WGCNA: multiGSub – R documentation

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WGCNA

multiGSub

Analogs of grep(l) and (g)sub for multiple patterns and relacements

Description

These functions provide convenient pattern finding and substitution for multiple patterns.

Usage

multiGSub(patterns, replacements, x, ...)
multiSub(patterns, replacements, x, ...)
multiGrep(patterns, x, ..., sort = TRUE, value = FALSE, invert = FALSE)
multiGrepl(patterns, x, ...)

Arguments

`patterns`	A character vector of patterns.
`replacements`	A character vector of replacements; must be of the same length as `patterns`.
`x`	Character vector of strings in which the pattern finding and replacements should be carried out.
`sort`	Logical: should the output indices be sorted in increasing order?
`value`	Logical: should value rather than the index of the value be returned?
`invert`	Logical: should the search be inverted and only indices of elements of `x` matching none of the patterns be returned?
`...`	Other arguments to `sub` or `grep`

Details

For each element of x, patterns are sequentiall searched for and (for multiSub and multiGSub substituted with the corresponding replacement.

Value

multiSub and multiGSub return a character vector of the same length as x, with all patterns replaces by their replacements in each element of x. multiSub replaces each pattern in each element of x only once, multiGSub as many times as the pattern is found.

multiGrep returns the indices of those elements in x in which at least one of patterns was found, or, if invert is TRUE, the indices of elements in which none of the patterns were found. If value is TRUE, values rather than indices are returned.

multiGrepl returns a logical vector of the same length as x, with TRUE is any of the patterns matched the element of x, and FALSE otherwise.

Author(s)

Peter Langfelder