Description

The diversity functions offered in abdiv are organized based on the function signature.

Usage

Format

Four objects of class character.

Details

The following character vectors are provided:

alpha_diversities

All non-phylogenetic alpha diversity measures. These functions take a single numeric vector as an argument.

beta_diversities

All non-phylogenetic beta diversity measures. These functions take two numeric vectors as arguments.

phylogenetic_alpha_diversities

There is only one phylogenetic alpha diversity measure implemented, but we use the plural to be consistent with the other vectors. This function takes a numeric vector, a phylogenetic tree object, and optionally a character vector of species labels.

phylogenetic_beta_diversities

Phylogenetic measures of beta diversity. These functions take two numeric vectors, a phylogenetic tree object, and optionally a character vector of species labels.