Phylogenies and quantitative traits from Abouheif
This data set gathers three phylogenies with three sets of traits as reported by Abouheif (1999).
data(abouheif.eg)
abouheif.eg is a list containing the 6 following objects :
is a character string giving the first phylogenetic tree made up of 8 leaves.
is a numeric vector with 8 values.
is a character string giving the second phylogenetic tree made up of 7 leaves.
is a numeric vector with 7 values.
is a character string giving the third phylogenetic tree made up of 15 leaves.
is a numeric vector with 15 values.
Data taken from the phylogenetic independence program developped by Ehab Abouheif
Abouheif, E. (1999) A method for testing the assumption of phylogenetic independence in comparative data. Evolutionary Ecology Research, 1, 895–909.
data(abouheif.eg) par(mfrow=c(2,2)) symbols.phylog(newick2phylog(abouheif.eg$tre1), abouheif.eg$vec1, sub = "Body Mass (kg)", csi = 2, csub = 2) symbols.phylog(newick2phylog(abouheif.eg$tre2), abouheif.eg$vec2, sub = "Body Mass (kg)", csi = 2, csub = 2) dotchart.phylog(newick2phylog(abouheif.eg$tre1), abouheif.eg$vec1, sub = "Body Mass (kg)", cdot = 2, cnod = 1, possub = "topleft", csub = 2, ceti = 1.5) dotchart.phylog(newick2phylog(abouheif.eg$tre2), abouheif.eg$vec2, sub = "Body Mass (kg)", cdot = 2, cnod = 1, possub = "topleft", csub = 2, ceti = 1.5) par(mfrow = c(1,1)) w.phy=newick2phylog(abouheif.eg$tre3) dotchart.phylog(w.phy,abouheif.eg$vec3, clabel.n = 1)
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