ade4: casitas – R documentation

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casitas

Enzymatic polymorphism in Mus musculus

Description

This data set is a data frame with 74 rows (mice) and 15 columns (loci enzymatic polymorphism of the DNA mitochondrial). Each value contains 6 characters coding for two allelles. The missing values are coding by '000000'.

Usage

data(casitas)

Format

The 74 individuals of casitas belong to 4 groups:

1: 24 mice of the sub-species Mus musculus domesticus
2: 11 mice of the sub-species Mus musculus castaneus
3: 9 mice of the sub-species Mus musculus musculus
4: 30 mice from a population of the lake Casitas (California)

Source

Exemple du logiciel GENETIX. Belkhir k. et al. GENETIX, logiciel sous WindowsTM pour la génétique des populations. Laboratoire Génome, Populations, Interactions CNRS UMR 5000, Université de Montpellier II, Montpellier (France).
https://kimura.univ-montp2.fr/genetix/

References

Orth, A., T. Adama, W. Din and F. Bonhomme. (1998) Hybridation naturelle entre deux sous espèces de souris domestique Mus musculus domesticus et Mus musculus castaneus près de Lake Casitas (Californie). Genome, 41, 104–110.

Examples

data(casitas)
str(casitas)
names(casitas)

ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

v1.7-16

GPL (>= 2)

Authors

Stéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, Daniel Borcard, Pierre Legendre, Stéphanie Bougeard and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.

Initial release