ade4: fission – R documentation

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fission

Fission pattern and heritable morphological traits

Description

This data set contains the mean values of five highly heritable linear combinations of cranial metric (GM1-GM3) and non metric (GN1-GN2) for 8 social groups of Rhesus Macaques on Cayo Santiago. It also describes the fission tree depicting the historical phyletic relationships.

Usage

data(fission)

Format

fission is a list containing the 2 following objects :

tre: is a character string giving the fission tree in Newick format.
tab: is a data frame with 8 social groups and five traits : cranial metrics (GM1, GM2, GM3) and cranial non metrics (GN1, GN2)

References

Cheverud, J. and Dow, M.M. (1985) An autocorrelation analysis of genetic variation due to lineal fission in social groups of rhesus macaques. American Journal of Physical Anthropology, 67, 113–122.

Examples

data(fission)
fis.phy <- newick2phylog(fission$tre)
table.phylog(fission$tab[names(fis.phy$leaves),], fis.phy, csi = 2)
gearymoran(fis.phy$Amat, fission$tab)

ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

v1.7-16

GPL (>= 2)

Authors

Stéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, Daniel Borcard, Pierre Legendre, Stéphanie Bougeard and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.

Initial release