ade4: ktab.match2ktabs – R documentation

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ktab.match2ktabs

STATIS and Co-Inertia : Analysis of a series of paired ecological tables

Description

Prepares the analysis of a series of paired ecological tables. Partial Triadic Analysis (see pta) can be used thereafter to perform the analysis of this k-table.

Usage

ktab.match2ktabs(KTX, KTY)

Arguments

`KTX`	an objet of class `ktab`
`KTY`	an objet of class `ktab`

Value

a list of class ktab, subclass kcoinertia. See ktab

WARNING

IMPORTANT : KTX and KTY must have the same k-tables structure, the same number of columns, and the same column weights.

Author(s)

Jean Thioulouse Jean.Thioulouse@univ-lyon1.fr

References

Thioulouse J., Simier M. and Chessel D. (2004). Simultaneous analysis of a sequence of paired ecological tables. Ecology 85, 272-283..

Simier, M., Blanc L., Pellegrin F., and Nandris D. (1999). Approche simultanée de K couples de tableaux : Application a l'étude des relations pathologie végétale - environnement. Revue de Statistique Appliquée, 47, 31-46.

Examples

data(meau)
wit1 <- withinpca(meau$env, meau$design$season, scan = FALSE, scal = "total")
pcaspe <- dudi.pca(meau$spe, scale = FALSE, scan = FALSE, nf = 2)
wit2 <- wca(pcaspe, meau$design$season, scan = FALSE, nf = 2)
kta1 <- ktab.within(wit1, colnames = rep(c("S1","S2","S3","S4","S5","S6"), 4))
kta2 <- ktab.within(wit2, colnames = rep(c("S1","S2","S3","S4","S5","S6"), 4))
kcoi <- ktab.match2ktabs(kta1, kta2)
ptacoi <- pta(kcoi, scan = FALSE, nf = 2)
plot(ptacoi)
kplot(ptacoi)

ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

v1.7-16

GPL (>= 2)

Authors

Stéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, Daniel Borcard, Pierre Legendre, Stéphanie Bougeard and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.

Initial release