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ade4

mantel.rtest

Mantel test (correlation between two distance matrices (in R).)

Description

Performs a Mantel test between two distance matrices.

Usage

mantel.rtest(m1, m2, nrepet = 99, ...)

Arguments

m1

an object of class dist
m2

an object of class dist
nrepet

the number of permutations
...

further arguments passed to or from other methods

Value

an object of class rtest (randomization tests)

Author(s)

Daniel Chessel
Stéphane Dray stephane.dray@univ-lyon1.fr

References

Mantel, N. (1967) The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209–220.

Examples

data(yanomama)
    gen <- quasieuclid(as.dist(yanomama$gen))
    geo <- quasieuclid(as.dist(yanomama$geo))
    plot(r1 <- mantel.rtest(geo,gen), main = "Mantel's test")
    r1
ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

v1.7-16
GPL (>= 2)
Authors
Stéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, Daniel Borcard, Pierre Legendre, Stéphanie Bougeard and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.
Initial release

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