Genetic Relationships between cattle breeds with microsatellites
This data set gives genetic relationships between cattle breeds with microsatellites.
data(microsatt)
microsatt is a list of 4 components.
contains the allelic frequencies for 18 cattle breeds (Taurine or Zebu,French or African) and 9 microsatellites.
is a vector of the names of loci.
is a vector of the number of alleles per locus.
is a vector of the names of alleles.
Extract of data prepared by D. Laloë ugendla@dga2.jouy.inra.fr from data used in:
Moazami-Goudarzi, K., D. Laloë, J. P. Furet, and F. Grosclaude (1997) Analysis of genetic relationships between 10 cattle breeds with 17 microsatellites. Animal Genetics, 28, 338–345.
Souvenir Zafindrajaona, P.,Zeuh V. ,Moazami-Goudarzi K., Laloë D., Bourzat D., Idriss A., and Grosclaude F. (1999) Etude du statut phylogénétique du bovin Kouri du lac Tchad à l'aide de marqueurs moléculaires. Revue d'Elevage et de Médecine Vétérinaire des pays Tropicaux, 55, 155–162.
Moazami-Goudarzi, K., Belemsaga D. M. A., Ceriotti G., Laloë D. , Fagbohoun F., Kouagou N. T., Sidibé I., Codjia V., Crimella M. C., Grosclaude F. and Touré S. M. (2001)
Caractérisation de la race bovine Somba à l'aide de marqueurs moléculaires.
Revue d'Elevage et de Médecine Vétérinaire des pays Tropicaux, 54, 1–10.
See a data description at http://pbil.univ-lyon1.fr/R/pdf/pps055.pdf (in French).
## Not run: data(microsatt) fac <- factor(rep(microsatt$loci.names, microsatt$loci.eff)) w <- dudi.coa(data.frame(t(microsatt$tab)), scann = FALSE) wit <- wca(w, fac, scann = FALSE) microsatt.ktab <- ktab.within(wit) plot(sepan(microsatt.ktab)) # 9 separated correspondence analyses plot(mcoa(microsatt.ktab, scan = FALSE)) plot(mfa(microsatt.ktab, scan = FALSE)) plot(statis(microsatt.ktab, scan = FALSE)) ## End(Not run)
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.