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table.cont

Plot of Contingency Tables


Description

presents a graph for viewing contingency tables.

Usage

table.cont(df, x = 1:ncol(df), y = 1:nrow(df),
    row.labels = row.names(df), col.labels = names(df),
    clabel.row = 1, clabel.col = 1, abmean.x = FALSE, abline.x = FALSE,
    abmean.y = FALSE, abline.y = FALSE, csize = 1, clegend = 0, grid = TRUE)

Arguments

df

a data frame with only positive or null values

x

a vector of values to position the columns

y

a vector of values to position the rows

row.labels

a character vector for the row labels

col.labels

a character vetor for the column labels

clabel.row

a character size for the row labels

clabel.col

a character size for the column labels

abmean.x

a logical value indicating whether the column conditional means should be drawn

abline.x

a logical value indicating whether the regression line of y onto x should be plotted

abmean.y

a logical value indicating whether the row conditional means should be drawn

abline.y

a logical value indicating whether the regression line of x onto y should be plotted

csize

a coefficient for the square size of the values

clegend

if not NULL, a character size for the legend used with par("cex")*clegend

grid

a logical value indicating whether a grid in the background of the plot should be drawn

Author(s)

Daniel Chessel

Examples

data(chats)
chatsw <- data.frame(t(chats))
chatscoa <- dudi.coa(chatsw, scann = FALSE)
par(mfrow = c(2,2))
table.cont(chatsw, abmean.x = TRUE, csi = 2, abline.x = TRUE, 
    clabel.r = 1.5, clabel.c = 1.5)
table.cont(chatsw, abmean.y = TRUE, csi = 2, abline.y = TRUE, 
    clabel.r = 1.5, clabel.c = 1.5)
table.cont(chatsw, x = chatscoa$c1[,1], y = chatscoa$l1[,1],
    abmean.x = TRUE, csi = 2, abline.x = TRUE, clabel.r = 1.5, clabel.c = 1.5)
table.cont(chatsw, x = chatscoa$c1[,1], y = chatscoa$l1[,1],
    abmean.y = TRUE, csi = 2, abline.y = TRUE, clabel.r = 1.5, clabel.c = 1.5)
par(mfrow = c(1,1))

## Not run: 
data(rpjdl)
w <- data.frame(t(rpjdl$fau))
wcoa <- dudi.coa(w, scann = FALSE)
table.cont(w, abmean.y = TRUE, x = wcoa$c1[,1], y = rank(wcoa$l1[,1]),
    csi = 0.2, clabel.c = 0, row.labels = rpjdl$lalab, clabel.r = 0.75)

## End(Not run)

ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

v1.7-16
GPL (>= 2)
Authors
Stéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, Daniel Borcard, Pierre Legendre, Stéphanie Bougeard and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.
Initial release

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