Examples of taxonomy
This data sets contains two taxonomies.
data(taxo.eg)
taxo.eg is a list containing the 2 following objects:
is a data frame with 15 species and 3 columns.
is a data frame with 40 species and 2 columns.
Variables of the first data frame are : genre (a factor genre with 8 levels),
famille (a factor familiy with 5 levels) and ordre (a factor order with 2 levels).
Variables of the second data frame are : gen(a factor genre with 29 levels), fam (a factor family with 19 levels).
data(taxo.eg) taxo.eg[[1]] as.taxo(taxo.eg[[1]]) class(taxo.eg[[1]]) class(as.taxo(taxo.eg[[1]])) tax.phy <- taxo2phylog(as.taxo(taxo.eg[[1]]), add.tools = TRUE) plot(tax.phy,clabel.l=1) par(mfrow = c(1,2)) table.phylog(tax.phy$Bindica,tax.phy) table.phylog(tax.phy$Bscores,tax.phy) par(mfrow = c(1,1)) radial.phylog(taxo2phylog(as.taxo(taxo.eg[[2]])))
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.