adegenet: Hs.test – R documentation

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Hs.test

Test differences in expected heterozygosity (Hs)

Description

This procedure permits to test if two groups have significant differences in expected heterozygosity (Hs). The test statistic used is simply the difference in Hs between the two groups 'x' and 'y':

Usage

Hs.test(x, y, n.sim = 999, alter = c("two-sided", "greater", "less"))

Arguments

`x`	a genind object.
`y`	a genind object.
`n.sim`	the number of permutations to be used to generate the reference distribution.
`alter`	a character string indicating the alternative hypothesis

Details

Hs(x) - Hs(y)

Individuals are randomly permuted between groups to obtain a reference distribution of the test statistics.

Value

an object of the class randtest

Author(s)

Thibaut Jombart t.jombart@imperial.ac.uk

Examples

## Not run: 
data(microbov)
Hs(microbov)
test <- Hs.test(microbov[pop="Borgou"],
                microbov[pop="Lagunaire"],
                n.sim=499)
test
plot(test)

## End(Not run)

adegenet

Exploratory Analysis of Genetic and Genomic Data

v2.1.3

GPL (>= 2)

Authors

Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maié [ctb], Libor Morkovsky [ctb], Ismail Ahmed [ctb], Anne Cori [ctb], Federico Calboli [ctb], RJ Ewing [ctb], Frédéric Michaud [ctb], Rebecca DeCamp [ctb], Alexandre Courtiol [ctb] (<https://orcid.org/0000-0003-0637-2959>)

Initial release