adegenet: as.SNPbin – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

as.SNPbin

Conversion to class "SNPbin"

Description

The class SNPbin is a formal (S4) class for storing a genotype of binary SNPs in a compact way, using a bit-level coding scheme. New instances of this class are best created using new; see the manpage of SNPbin for more information on this point.

As a shortcut, conversion methods can be used to convert various objects into a SNPbin object. Conversions can be achieved using S3-style (as.SNPbin(x)) or S4-style (as(x,"SNPbin") procedures. All of them call upon the constructor (new) of SNPbin objects.

Conversion is currently available from the following objects: - integer vectors - numeric vectors

Author(s)

Thibaut Jombart (t.jombart@imperial.ac.uk)

Examples

## Not run: 
## data to be converted
dat <- c(1,0,0,2,1,1,1,2,2,1,1,0,0,1)

## using the constructor
x1 <- new("SNPbin", dat)
x1

## using 'as' methods
x2 <- as.SNPbin(dat)
x3 <- as(dat, "SNPbin")

identical(x1,x2)
identical(x1,x3)

## End(Not run)

adegenet

Exploratory Analysis of Genetic and Genomic Data

v2.1.3

GPL (>= 2)

Authors

Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maié [ctb], Libor Morkovsky [ctb], Ismail Ahmed [ctb], Anne Cori [ctb], Federico Calboli [ctb], RJ Ewing [ctb], Frédéric Michaud [ctb], Rebecca DeCamp [ctb], Alexandre Courtiol [ctb] (<https://orcid.org/0000-0003-0637-2959>)

Initial release

as.SNPbin

Description

Author(s)

See Also

Examples

adegenet

We don't support your browser anymore