Returns original points in results paths of an object of class 'monmonier'
The original implementation of monmonier in package
adegenet returns path coordinates, coords.monmonier
additionally displays identities of the original points of the network,
based on original coordinates.
coords.monmonier(x)
x |
an object of class |
Returns a list with elements according to the x$nrun result of the monmonier object.
Corresponding path points are in the same order as in the original object.
run1 (run2, ...): for each run, a list containing a matrix giving the
original points in the network (first and second,
indicating pairs of neighbours). Path coordinates are stored in
columns x.hw and y.hw. first and second
are integers referring to the row numbers in the x$xy matrix of
the original monmonier object.
Peter Solymos, Solymos.Peter@aotk.szie.hu
## Not run:
if(require(spdep)){
load(system.file("files/mondata1.rda",package="adegenet"))
cn1 <- chooseCN(mondata1$xy,type=2,ask=FALSE)
mon1 <- monmonier(mondata1$xy,dist(mondata1$x1),cn1,threshold=2,nrun=3)
mon1$run1
mon1$run2
mon1$run3
path.coords <- coords.monmonier(mon1)
path.coords
}
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.