adegenet: old2new – R documentation

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old2new

Convert objects with obsolete classes into new objects

Description

The genind and genlight objects have changed in Adegenet version 2.0. They have each gained strata and hierarchy slots. What's more is that the genind objects have been optimized for storage and now store the tab slot as integers instead of numerics. This function will convert old genind or genlight objects to new ones seamlessly.

Usage

old2new_genind(object, donor = new("genind"))

old2new_genlight(object, donor = new("genlight"))

old2new_genpop(object, donor = new("genpop"))

Arguments

`object`	a genind or genlight object from version 1.4 or earlier.
`donor`	a new object to place all the data into.

Author(s)

Thibaut Jombart t.jombart@imperial.ac.uk
Zhian N. Kamvar kamvarz@science.oregonstate.edu

adegenet

Exploratory Analysis of Genetic and Genomic Data

v2.1.3

GPL (>= 2)

Authors

Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maié [ctb], Libor Morkovsky [ctb], Ismail Ahmed [ctb], Anne Cori [ctb], Federico Calboli [ctb], RJ Ewing [ctb], Frédéric Michaud [ctb], Rebecca DeCamp [ctb], Alexandre Courtiol [ctb] (<https://orcid.org/0000-0003-0637-2959>)

Initial release