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R
adegenet

population-methods

Manipulate the population factor of genind objects.

Description

The following methods allow the user to quickly change the population of a genind object.

Usage

setPop(x, formula = NULL)

setPop(x) <- value

Arguments

x

a genind or genlight object
formula

a nested formula indicating the order of the population strata.
value

same as formula

Author(s)

Zhian N. Kamvar

Examples

data(microbov)

strata(microbov) <- data.frame(other(microbov))

# Currently set on just 
head(pop(microbov)) 

# setting the strata to both Pop and Subpop
setPop(microbov) <- ~coun/breed 
head(pop(microbov))

## Not run: 

# Can be used to create objects as well.
microbov.old <- setPop(microbov, ~spe) 
head(pop(microbov.old))

## End(Not run)
adegenet

Exploratory Analysis of Genetic and Genomic Data

v2.1.3
GPL (>= 2)
Authors
Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maié [ctb], Libor Morkovsky [ctb], Ismail Ahmed [ctb], Anne Cori [ctb], Federico Calboli [ctb], RJ Ewing [ctb], Frédéric Michaud [ctb], Rebecca DeCamp [ctb], Alexandre Courtiol [ctb] (<https://orcid.org/0000-0003-0637-2959>)
Initial release

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