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read.fstat

Reading data from Fstat

Description

The function read.fstat reads Fstat data files (.dat) and convert them into a genind object.

Usage

read.fstat(file, quiet = FALSE)

Arguments

file

a character string giving the path to the file to convert, with the appropriate extension.
quiet

logical stating whether a conversion message must be printed (TRUE,default) or not (FALSE).

Details

Note: read.fstat is meant for DIPLOID DATA ONLY. Haploid data with the Hierfstat format can be read into R using read.table or read.csv after removing headers and 'POP' lines, and then converted using df2genind.

Value

an object of the class genind

Author(s)

Thibaut Jombart t.jombart@imperial.ac.uk

References

Fstat (version 2.9.3). Software by Jerome Goudet. http://www2.unil.ch/popgen/softwares/fstat.htm

See Also

Examples

obj <- read.fstat(system.file("files/nancycats.dat",package="adegenet"))
obj
adegenet

Exploratory Analysis of Genetic and Genomic Data

v2.1.3
GPL (>= 2)
Authors
Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maié [ctb], Libor Morkovsky [ctb], Ismail Ahmed [ctb], Anne Cori [ctb], Federico Calboli [ctb], RJ Ewing [ctb], Frédéric Michaud [ctb], Rebecca DeCamp [ctb], Alexandre Courtiol [ctb] (<https://orcid.org/0000-0003-0637-2959>)
Initial release

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