Reading data from GENETIX
The function read.genetix reads GENETIX data files (.gtx) and convert
them into a genind object.
read.genetix(file = NULL, quiet = FALSE)
file |
a character string giving the path to the file to convert, with the appropriate extension. |
quiet |
logical stating whether a conversion message must be printed (TRUE,default) or not (FALSE). |
Note: read.genetix is meant for DIPLOID DATA ONLY. Haploid data with
the GENETIX format can be read into R using read.table or
read.csv after removing headers and 'POP' lines, and then converted
using df2genind.
an object of the class genind
Thibaut Jombart t.jombart@imperial.ac.uk
Belkhir K., Borsa P., Chikhi L., Raufaste N. & Bonhomme F.
(1996-2004) GENETIX 4.05, logiciel sous Windows TM pour la genetique des
populations. Laboratoire Genome, Populations, Interactions, CNRS UMR 5000,
Universite de Montpellier II, Montpellier (France).
obj <- read.genetix(system.file("files/nancycats.gtx",package="adegenet"))
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