adegenet: snapclust.choose.k – R documentation

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adegenet

snapclust.choose.k

Choose the number of clusters for snapclust using BIC

Description

Do not use. We work on that stuff. Contact us if interested.

Usage

snapclust.choose.k(max, ..., IC = AIC, IC.only = TRUE)

Arguments

`max`	An integer indicating the maximum number of clusters to seek; `snapclust` will be run for all k from 2 to max.
`...`	Arguments passed to `snapclust`.
`IC`	A function computing the information criterion for `snapclust` objects. Available statistics are `AIC` (default), `AICc`, and `BIC`.
`IC.only`	A logical (TRUE by default) indicating if IC values only should be returned; if `FALSE`, full `snapclust` objects are returned.

Author(s)

Thibaut Jombart thibautjombart@gmail.com

Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maié [ctb], Libor Morkovsky [ctb], Ismail Ahmed [ctb], Anne Cori [ctb], Federico Calboli [ctb], RJ Ewing [ctb], Frédéric Michaud [ctb], Rebecca DeCamp [ctb], Alexandre Courtiol [ctb] (<https://orcid.org/0000-0003-0637-2959>)

Initial release